The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1104
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 537636
End posion on genome 537564
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gagtaaaata
tRNA gene sequence 
GCGGCTTTGATGTAGACTGGTATCATACGGCCCTGCCACGGCCGACACCCGGGTTCAAAT
CCCGGAGGCCGCAtct
Downstream region at tRNA end position 
ctaaactttg
Secondary structure (Cloverleaf model)
>At1104	Gly	GCC
                   a      Atct ctaaactttg
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     T + G
                     T - A          T A
                    T     G G C C C     A
      A G A        G      | | | | |     A
    C       T G T A       C C G G G     C
    T         | | |                 T T
    G       T C A T
      G T A        A     ACAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCTTTGATGTAGACTGGTATCATACGGCCCTGCCACGGCCGACACCCGGGTTCAAAT
CCCGGAGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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