The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1107
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 778123
End posion on genome 778039
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ggttcactgt
tRNA gene sequence 
GCGAGGGTTGCCAAGCCTGGTTAAAGGCGCTAGGTTGAGGGCCTAGTCTCATAGGAGTTC
GAGGGTTCGAATCCCTTCCCTCGCAtat
Downstream region at tRNA end position 
ttttcaaatt
Secondary structure (Cloverleaf model)
>At1107	Leu	GAG
                   t      Atat ttttcaaatt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     G
  T         A C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    T T A A        G     TCTCATAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCAAGCCTGGTTAAAGGCGCTAGGTTGAGGGCCTAGTCTCATAGGAGTTC
GAGGGTTCGAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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