The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1108
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 893695
End posion on genome 893621
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gattattgtg
tRNA gene sequence 
GCCGTGGTAGGGTAGTGGCTATCCTGAGGGACTGTGGATCCCTCGACCCGGGTTCGATTC
CCGGTCTCGGCCCCA
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>At1108	His	GTG
                   g      CCCA tttttatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     T   T
                     G - C
                     G + T          T T
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    C       T C C T
      T A          G     CGAC
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTGGTAGGGTAGTGGCTATCCTGAGGGACTGTGGATCCCTCGACCCGGGTTCGATTC
CCGGTCTCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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