The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1109
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 893810
End posion on genome 893726
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
atttttaagt
tRNA gene sequence 
GCAGGGGTTGTCGAGCCTGGCCAAAGATGCAGGACTTAGAATCCTGTCCAGTAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCAtta
Downstream region at tRNA end position 
tatcaatcgt
Secondary structure (Cloverleaf model)
>At1109	Leu	TAG
                   t      Atta tatcaatcgt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
    C C G A        T      | | | | |     A
  T         G C T G       C A G G G     C
  G           | | +                 T T
  G         A G A T
    C C A A        G     TCCAGTAGTGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTTGTCGAGCCTGGCCAAAGATGCAGGACTTAGAATCCTGTCCAGTAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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