The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1110
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 893899
End posion on genome 893825
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tatgaaacaa
tRNA gene sequence 
GCTCCAGTGGTGTAGTCCGGCCAATCATCCGGCCCTTTCGAGGCCGGGACTCGGGTTCAA
ATCCCGGCTGGAGCAttt
Downstream region at tRNA end position 
tatttttaag
Secondary structure (Cloverleaf model)
>At1110	Glu	TTC
                   a      Attt tatttttaag
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        C     GGAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCAGTGGTGTAGTCCGGCCAATCATCCGGCCCTTTCGAGGCCGGGACTCGGGTTCAA
ATCCCGGCTGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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