The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1112
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 894104
End posion on genome 894028
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
atgacagcga
tRNA gene sequence 
GCCTCCTTAGCTCAGTAGGTAGCAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAG
CCCTGCAGGAGGCGCCA
Downstream region at tRNA end position 
ttttttctaa
Secondary structure (Cloverleaf model)
>At1112	Asn	GTT
                   a      GCCA ttttttctaa
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     C - G
                     T - A          C G
                    T     C G T C C     A
      T G A        A      | | | | |     G
    A       C T C G       G C A G G     C
    G         | | |                 T T
    G       C A G C
      T A G        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCCTTAGCTCAGTAGGTAGCAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAG
CCCTGCAGGAGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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