The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1114
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 996290
End posion on genome 996218
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttaatgaat
tRNA gene sequence 
GGGCCCGTAGCTCAGTTGGGAGAGCGCCGCCCTTGCAAGGCGGAGGCCGTGGGTTCAAAT
CCCGCCGGGTCCActt
Downstream region at tRNA end position 
tattagcagt
Secondary structure (Cloverleaf model)
>At1114	Ala	TGC
                   t      Actt tattagcagt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      T G A        A      | + | | |     A
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTTGGGAGAGCGCCGCCCTTGCAAGGCGGAGGCCGTGGGTTCAAAT
CCCGCCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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