The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1115
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 1039844
End posion on genome 1039771
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
gaatagtcgt
tRNA gene sequence 
GCTTCAGTGGCTCAGCCTGGTAGAGCGCCTGCTTGGTAAGCAGGAGGCCGCGGGTTCAAA
CCCCGCCTGAAGCTcgt
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>At1115	Thr	GGT
                   t      Tcgt tttttatttt
                     G - C
                     C - G
                     T - A
                     T - A
                     C - G
                     A - T
                     G - C          C A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGCC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTTCAGTGGCTCAGCCTGGTAGAGCGCCTGCTTGGTAAGCAGGAGGCCGCGGGTTCAAA
CCCCGCCTGAAGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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