The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1119
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 82518
End posion on genome 82593
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
ctattaaaga
tRNA gene sequence 
AGCCCAGTAGTGTAGTGGCCAATCATCCGTGCCTTTGGAGCATGGGACCGCGGTTCGAAT
CCGCGCTGGGCTACCA
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>At1119	Gln	TTG
                   a      ACCA tttttatttt
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G C G C C     A
      T G A        A      | | | | |     G
    G       T G T G       C G C G G     C
    G         | | +                 T T
    C       T C A T
      C A A        C     GGAC
                    C - G
                    G + T
                    T - A
                    G - C
                    C - G
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCAGTAGTGTAGTGGCCAATCATCCGTGCCTTTGGAGCATGGGACCGCGGTTCGAAT
CCGCGCTGGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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