The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1122
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 113083
End posion on genome 113156
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cacttatatt
tRNA gene sequence 
CCCGCGATAGTTCAGACTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCTCGCGGGActc
Downstream region at tRNA end position 
atatattatt
Secondary structure (Cloverleaf model)
>At1122	Tyr	GTA
                   t      Actc atatattatt
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     A - T          T A
                    T     C G G C C     A
      A G A        A      | | + | |     A
    C       C T T G       G C T G G     C
    T       | | | |                 T T
    G       G A A C
      G T A        G     ATGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGATAGTTCAGACTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCTCGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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