The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1127
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 197613
End posion on genome 197697
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tgtgctcatt
tRNA gene sequence 
GGAGGGATTGCCAAGCCTGGTCAAAGGCGTCGGACTTAAGATCCGATCCGGTAGCGGTTC
GAGGGTTCAAATCCCTTTCCCTCCActt
Downstream region at tRNA end position 
tttgaaataa
Secondary structure (Cloverleaf model)
>At1127	Leu	TAA
                   t      Actt tttgaaataa
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     A
  T         A C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCGGTAGCGGTTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAGGGATTGCCAAGCCTGGTCAAAGGCGTCGGACTTAAGATCCGATCCGGTAGCGGTTC
GAGGGTTCAAATCCCTTTCCCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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