The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1131
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 454031
End posion on genome 454115
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agttgttcgt
tRNA gene sequence 
GCGGAGATGGCCCAGTCTGGTACGGCGCGGGACTGCTAATCCCGTTACGCTCTGCGTAAC
CCGAGTTCAAATCTCGGTCTCCGCGttt
Downstream region at tRNA end position 
ttgatttaac
Secondary structure (Cloverleaf model)
>At1131	Ser	GCT
                   t      Gttt ttgatttaac
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G G C T C     A
      T G A        G      | | | | |     A
    C       C C C G       C C G A G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TTACGCTCTGCGTAAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGATGGCCCAGTCTGGTACGGCGCGGGACTGCTAATCCCGTTACGCTCTGCGTAAC
CCGAGTTCAAATCTCGGTCTCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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