The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1132
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 700097
End posion on genome 700170
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
atttgagtat
tRNA gene sequence 
GCCCTCATGGGGTAGCTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA
TCCCGATGGGGGCGttt
Downstream region at tRNA end position 
aattatatta
Secondary structure (Cloverleaf model)
>At1132	Arg	GCG
                   t      Gttt aattatatta
                     G - C
                     C - G
                     C - G
                     C - G
                     T + G
                     C - G
                     A - T          T A
                    T     A G C C C     A
    T C G A        G      | | | | |     A
  A         T G G G       T C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          C     GGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCTCATGGGGTAGCTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA
TCCCGATGGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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