The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1135
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1309452
End posion on genome 1309525
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ctattcagac
tRNA gene sequence 
GGGGCCGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAA
TCTCGGCGGCCCCActt
Downstream region at tRNA end position 
tttattaatt
Secondary structure (Cloverleaf model)
>At1135	Pro	GGG
                   c      Actt tttattaatt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
      C G A        G      | | | | |     G
    C       T G G G       C C G A G     C
    T       | + | |                 T T
    G       A T C C
      G C C        T     GCAAC
                    G + T
                    T + G
                    G - C
                    C - G
                    G   G
                  T       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAA
TCTCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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