The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1136
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1497882
End posion on genome 1497956
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
attggaaatt
tRNA gene sequence 
AGGGCAGTGGCTCAGCCTGGTTAGAGTGCTCGGCTGATAACCGAGTGGTCCGGGGTTCGA
ATCCCCGCTGCCCTActt
Downstream region at tRNA end position 
ttttctattt
Secondary structure (Cloverleaf model)
>At1136	Ile	GAT
                   t      Actt ttttctattt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     G
  T         C T C G       C G G G G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGGCAGTGGCTCAGCCTGGTTAGAGTGCTCGGCTGATAACCGAGTGGTCCGGGGTTCGA
ATCCCCGCTGCCCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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