The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1145
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1269029
End posion on genome 1268957
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gttagaacgt
tRNA gene sequence 
GCGCCAGTGGTGTAGCCTGGTATCACTTTGGCCTTCCAAGCCAGTAACTCGGGTTCAAAT
CCCGACTGGCGCAcct
Downstream region at tRNA end position 
ttttatttta
Secondary structure (Cloverleaf model)
>At1145	Gly	TCC
                   t      Acct ttttatttta
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T         | | |                 T T
    G       T C A C
      G T A        T     TAAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCAGTGGTGTAGCCTGGTATCACTTTGGCCTTCCAAGCCAGTAACTCGGGTTCAAAT
CCCGACTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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