The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1146
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1269120
End posion on genome 1269048
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gaatgaaata
tRNA gene sequence 
GCGGCTTTGATGTAGACTGGTATCATACGGCCCTGCCACGGCCGACACCCGGGTTCAAAT
CCCGGAGGCCGCAtct
Downstream region at tRNA end position 
ctacagttag
Secondary structure (Cloverleaf model)
>At1146	Gly	GCC
                   a      Atct ctacagttag
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     T + G
                     T - A          T A
                    T     G G C C C     A
      A G A        G      | | | | |     A
    C       T G T A       C C G G G     C
    T         | | |                 T T
    G       T C A T
      G T A        A     ACAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCTTTGATGTAGACTGGTATCATACGGCCCTGCCACGGCCGACACCCGGGTTCAAAT
CCCGGAGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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