The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1147
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1305357
End posion on genome 1305284
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
taggaaatgt
tRNA gene sequence 
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAGGGGTTCAAA
TCCCTTCCTTGGCTttt
Downstream region at tRNA end position 
tttattttag
Secondary structure (Cloverleaf model)
>At1147	Cys	GCA
                   t      Tttt tttattttag
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        A      | + | | |     A
    C       T C T G       A G G G G     C
    C       | | + |                 T T
    G       A G G C
      G C G        A     TTCAG
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAGGGGTTCAAA
TCCCTTCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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