The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1150
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1600972
End posion on genome 1600898
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cgatattgtg
tRNA gene sequence 
GCCGTGGTAGGGTAGTGGCTATCCTGAGGGACTGTGGATCCCTCGACCCGGGTTCGATTC
CCGGTCTCGGCCCCA
Downstream region at tRNA end position 
ttttttattt
Secondary structure (Cloverleaf model)
>At1150	His	GTG
                   g      CCCA ttttttattt
                     G - C
                     C - G
                     C - G
                     G - C
                     T   T
                     G - C
                     G + T          T T
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    C       T C C T
      T A          G     CGAC
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTGGTAGGGTAGTGGCTATCCTGAGGGACTGTGGATCCCTCGACCCGGGTTCGATTC
CCGGTCTCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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