The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1151
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1601086
End posion on genome 1601002
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
tattttaagt
tRNA gene sequence 
GCAGGGGTTGTCGAGCCTGGCCAAAGATGCAGGACTTAGAATCCTGTCCAGTAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCAtta
Downstream region at tRNA end position 
tagtaatatt
Secondary structure (Cloverleaf model)
>At1151	Leu	TAG
                   t      Atta tagtaatatt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
    C C G A        T      | | | | |     A
  T         G C T G       C A G G G     C
  G           | | +                 T T
  G         A G A T
    C C A A        G     TCCAGTAGTGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTTGTCGAGCCTGGCCAAAGATGCAGGACTTAGAATCCTGTCCAGTAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK