The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1152
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1601174
End posion on genome 1601100
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tttgaaacaa
tRNA gene sequence 
GCTCCAGTGGTGTAGTCCGGCCAATCATCCGGCCCTTTCGAGGCCGGGACTCGGGTTCAA
ATCCCGGCTGGAGCAttt
Downstream region at tRNA end position 
tattttaagt
Secondary structure (Cloverleaf model)
>At1152	Glu	TTC
                   a      Attt tattttaagt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        C     GGAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCAGTGGTGTAGTCCGGCCAATCATCCGGCCCTTTCGAGGCCGGGACTCGGGTTCAA
ATCCCGGCTGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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