The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1154
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1601378
End posion on genome 1601302
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
atgacagcga
tRNA gene sequence 
GCCTCCTTAGCTCAGTAGGTAGCAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAG
CCCTGCAGGAGGCGCCA
Downstream region at tRNA end position 
ttttttctaa
Secondary structure (Cloverleaf model)
>At1154	Asn	GTT
                   a      GCCA ttttttctaa
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     C - G
                     T - A          C G
                    T     C G T C C     A
      T G A        A      | | | | |     G
    A       C T C G       G C A G G     C
    G         | | |                 T T
    G       C A G C
      T A G        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCCTTAGCTCAGTAGGTAGCAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAG
CCCTGCAGGAGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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