The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1156
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 643422
End posion on genome 643496
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aaaatatgtt
tRNA gene sequence 
GGGCCCGTGGTTTAGCTTGGACAGAATACAGGGCTTCGGACCCTGTGGTCGGGGGTTCAA
ATCCCTCCGGGCTCGtca
Downstream region at tRNA end position 
acttttttaa
Secondary structure (Cloverleaf model)
>At1156	Arg	TCG
                   t      Gtca acttttttaa
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
    T C G A        G      | + | | |     A
  T         T T T G       G G G G G     C
  G         + | | +                 T T
  G         G A A T
    A C A          A     TGGTC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTTTAGCTTGGACAGAATACAGGGCTTCGGACCCTGTGGTCGGGGGTTCAA
ATCCCTCCGGGCTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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