The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1157
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 686363
End posion on genome 686450
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aacctaatgt
tRNA gene sequence 
GCAGAGATAGTCTAGCTTGGGAAGGCGTACGGCTGGAAACCGTATGAGGCTTTGCCTCGC
GGGGGTTCAAATCCCCCTCTCTGCGCCA
Downstream region at tRNA end position 
tttatttttt
Secondary structure (Cloverleaf model)
>At1157	Ser	GGA
                   t      GCCA tttatttttt
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    T       T C T G       G G G G G     C
    T       | | + |                 T T
    G       A G G C
      G G A        G     TGAGGCTTTGCCTCGC
                    T - A
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGATAGTCTAGCTTGGGAAGGCGTACGGCTGGAAACCGTATGAGGCTTTGCCTCGC
GGGGGTTCAAATCCCCCTCTCTGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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