The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1158
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 690077
End posion on genome 690150
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
cctgtattta
tRNA gene sequence 
GGGGCTGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAA
TCTCGGCAGCCCCAtat
Downstream region at tRNA end position 
tttattaaaa
Secondary structure (Cloverleaf model)
>At1158	Pro	GGG
                   a      Atat tttattaaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     G G C T C     A
      C G A        G      | | | | |     G
    C       T G G G       C C G A G     C
    T       | + | |                 T T
    G       A T C C
      G C C        T     GCAAC
                    G + T
                    T + G
                    G - C
                    C - G
                    G   G
                  T       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCTGTGGGGTAGCCTGGCCATCCTGTGCGTCTGGGGGGCGTGCAACCCGAGTTCGAA
TCTCGGCAGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK