The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1162
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1097259
End posion on genome 1097331
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
aagtcactga
tRNA gene sequence 
AGCCCAGTAGTGTAGTGGCCAATCATCTAGGTCTTTGGAACCTGGGACCGCGGTTCGAAT
CCGCGCTGGGCTActt
Downstream region at tRNA end position 
tttaattttg
Secondary structure (Cloverleaf model)
>At1162	Gln	TTG
                   a      Actt tttaattttg
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     G C G C C     A
      T G A        A      | | | | |     G
    G       T G T G       C G C G G     C
    G         | | +                 T T
    C       T C A T
      C A A        C     GGAC
                    T + G
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCAGTAGTGTAGTGGCCAATCATCTAGGTCTTTGGAACCTGGGACCGCGGTTCGAAT
CCGCGCTGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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