The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1164
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1127062
End posion on genome 1127139
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tcgttaaaaa
tRNA gene sequence 
GGGCCTGTGGGGTAGCCTGGTCCATCCTTTGGGATTTGGGATCCTGAGACCCCAGTTCAA
ATCTGGGCAGGCCCACCA
Downstream region at tRNA end position 
ttatttcccc
Secondary structure (Cloverleaf model)
>At1164	Pro	TGG
                   a      ACCA ttatttcccc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     G G G T C     A
    C C G A        G      | | | | |     A
  T         T G G G       C C C A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        T     AGAC
                    T + G
                    G + T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTGTGGGGTAGCCTGGTCCATCCTTTGGGATTTGGGATCCTGAGACCCCAGTTCAA
ATCTGGGCAGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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