The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1165
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1127147
End posion on genome 1127220
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
ccattatttc
tRNA gene sequence 
CCCGCGATAGTTCAGATTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCTCGCGGGAttt
Downstream region at tRNA end position 
aaatatcccc
Secondary structure (Cloverleaf model)
>At1165	Tyr	GTA
                   c      Attt aaatatcccc
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     A - T          T A
                    T     C G G C C     A
      A G A        A      | | + | |     A
    T       C T T G       G C T G G     C
    T       | | | |                 T T
    G       G A A C
      G T A        G     ATGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGATAGTTCAGATTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCTCGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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