The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1170
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1206396
End posion on genome 1206480
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atgtttcatt
tRNA gene sequence 
GGAGGGATTGCCAAGCCTGGTCAAAGGCGTCGGACTTAAGATCCGATCCGGTAGCGGTTC
GGGGGTTCAAATCCCCTTCCCTCCActt
Downstream region at tRNA end position 
tttcgaataa
Secondary structure (Cloverleaf model)
>At1170	Leu	TAA
                   t      Actt tttcgaataa
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     T C C C C     A
    C C G A        T      + | | | |     A
  T         A C C G       G G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCGGTAGCGGTTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGAGGGATTGCCAAGCCTGGTCAAAGGCGTCGGACTTAAGATCCGATCCGGTAGCGGTTC
GGGGGTTCAAATCCCCTTCCCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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