The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1171
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1215120
End posion on genome 1215192
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ctttagttcc
tRNA gene sequence 
GGGCCCGTAGCTCAGTTGGGAGAGCGCTGCCCTTGCAAGGCAGAGGCCGTGGGTTCAAAT
CCCGCCGGGTCCActt
Downstream region at tRNA end position 
tatgcagtct
Secondary structure (Cloverleaf model)
>At1171	Ala	TGC
                   c      Actt tatgcagtct
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      T G A        A      | + | | |     A
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGCC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTTGGGAGAGCGCTGCCCTTGCAAGGCAGAGGCCGTGGGTTCAAAT
CCCGCCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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