The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1173
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1376273
End posion on genome 1376347
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
caaggtaaat
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGCCAATCATGCTGGCCTTTCGAGCCAGCGACTCGGGTTCAA
ATCCCGGCCGGAGCActt
Downstream region at tRNA end position 
tttaatttta
Secondary structure (Cloverleaf model)
>At1173	Glu	TTC
                   t      Actt tttaatttta
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAATCATGCTGGCCTTTCGAGCCAGCGACTCGGGTTCAA
ATCCCGGCCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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