The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1175 |
Genome ID | CP000742 |
Phylum/Class | Euryarchaeota |
Species | Methanococcus vannielii SB [CP000742] |
Start position on genome
|
1603084
|
End posion on genome
|
1603157
|
Amino Acid
|
Arg
|
Anticodon
|
GCG
|
Upstream region at tRNA start position
|
ataaaaaaat
|
tRNA gene sequence
|
GCCCTCATGGGGTAGTTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA TCCCGATGAGGGCGcat
|
Downstream region at tRNA end position
|
tttttaagat
|
Secondary structure (Cloverleaf model) | >At1175 Arg GCG
t Gcat tttttaagat
G - C
C - G
C - G
C - G
T - A
C - G
A - T T A
T A G C C C A
T T G A G | | | | | A
A T G G G T C G G G C
G | | + T T
G T C C T
A T A C GGAC
G + T
C - G
G - C
G - C
A - T
C A
T G
G C G
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GCCCTCATGGGGTAGTTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA TCCCGATGAGGGCG |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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