The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1175
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1603084
End posion on genome 1603157
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ataaaaaaat
tRNA gene sequence 
GCCCTCATGGGGTAGTTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA
TCCCGATGAGGGCGcat
Downstream region at tRNA end position 
tttttaagat
Secondary structure (Cloverleaf model)
>At1175	Arg	GCG
                   t      Gcat tttttaagat
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T          T A
                    T     A G C C C     A
    T T G A        G      | | | | |     A
  A         T G G G       T C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          C     GGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCTCATGGGGTAGTTAGGATATCCTCGCGGACTGCGGATCCGTGGACTCGGGTTCAAA
TCCCGATGAGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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