The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1179
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 648601
End posion on genome 648529
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tgtgaaatgt
tRNA gene sequence 
GCGCCAGTGGTGTAGCCTGGTATCACTCTGGCCTTCCAAGCCAGTTACTCGGGTTCAAAT
CCCGACTGGCGCAttt
Downstream region at tRNA end position 
ttattttaga
Secondary structure (Cloverleaf model)
>At1179	Gly	TCC
                   t      Attt ttattttaga
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T         | | |                 T T
    G       T C A C
      G T A        T     TTAC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCAGTGGTGTAGCCTGGTATCACTCTGGCCTTCCAAGCCAGTTACTCGGGTTCAAAT
CCCGACTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK