The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1180
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 648709
End posion on genome 648637
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gaaaaaaata
tRNA gene sequence 
GCGGCTTTGATGTAGACTGGTATCATACGGCCCTGCCACGGCCGACACCCGGGTTCAAAT
CCCGGAGGCCGCAtct
Downstream region at tRNA end position 
ttaaaatata
Secondary structure (Cloverleaf model)
>At1180	Gly	GCC
                   a      Atct ttaaaatata
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     T + G
                     T - A          T A
                    T     G G C C C     A
      A G A        G      | | | | |     A
    C       T G T A       C C G G G     C
    T         | | |                 T T
    G       T C A T
      G T A        A     ACAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCTTTGATGTAGACTGGTATCATACGGCCCTGCCACGGCCGACACCCGGGTTCAAAT
CCCGGAGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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