The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1181
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 685954
End posion on genome 685881
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
taagagacgt
tRNA gene sequence 
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAGGGGTTCAAA
TCCCTTCCTTGGCTttt
Downstream region at tRNA end position 
tttattttga
Secondary structure (Cloverleaf model)
>At1181	Cys	GCA
                   t      Tttt tttattttga
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        A      | + | | |     A
    C       T C T G       A G G G G     C
    C       | | + |                 T T
    G       A G G C
      G C G        A     TTCAG
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAGGGGTTCAAA
TCCCTTCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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