The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1183
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 890985
End posion on genome 890901
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
aaatcatgga
tRNA gene sequence 
GCGAGGGTTGCCAAGCCTGGTTAAAGGCGCTAGATTGAGGGTCTAGTCTCGTAGGAGTTC
GAGGGTTCAAATCCCTTCCCTCGCAtat
Downstream region at tRNA end position 
tttttcaaat
Secondary structure (Cloverleaf model)
>At1183	Leu	GAG
                   a      Atat tttttcaaat
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     A
  T         A C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    T T A A        G     TCTCGTAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCAAGCCTGGTTAAAGGCGCTAGATTGAGGGTCTAGTCTCGTAGGAGTTC
GAGGGTTCAAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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