The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1184
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 975148
End posion on genome 975074
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cacatctgtg
tRNA gene sequence 
GCCGAGGTAGGGTAGTGGCTATCCTGAAGGACTGTGGATCCTTCGACCCGGGTTCAATTC
CCGGTCTCGGCCCCA
Downstream region at tRNA end position 
tttttattat
Secondary structure (Cloverleaf model)
>At1184	His	GTG
                   g      CCCA tttttattat
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G + T          T T
                    T     G G C C C     A
      T G A        A      | | | | |     A
    G       T G G G       C C G G G     C
    G         | | +                 T T
    C       T C C T
      T A          G     CGAC
                    A - T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTAGGGTAGTGGCTATCCTGAAGGACTGTGGATCCTTCGACCCGGGTTCAATTC
CCGGTCTCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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