The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1185
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 975284
End posion on genome 975200
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
atttttaagt
tRNA gene sequence 
GCAGGGGTTGTCGAGCCTGGTCAAAGATGCAGGACTTAGAATCCTGTCCAGTAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCAtta
Downstream region at tRNA end position 
tatattaacg
Secondary structure (Cloverleaf model)
>At1185	Leu	TAG
                   t      Atta tatattaacg
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
    C C G A        T      | | | | |     A
  T         G C T G       C A G G G     C
  G           | | +                 T T
  G         A G A T
    T C A A        G     TCCAGTAGTGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTTGTCGAGCCTGGTCAAAGATGCAGGACTTAGAATCCTGTCCAGTAGTGGTTC
CAGGGTTCAAATCCCTGCCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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