The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1186
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 975373
End posion on genome 975299
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
agttaaactt
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGCCAATCATGCTGGCCTTTCGAGCCAGCGACTCGGGTTCAA
ATCCCGGCCGGAGCAttt
Downstream region at tRNA end position 
tatttttaag
Secondary structure (Cloverleaf model)
>At1186	Glu	TTC
                   t      Attt tatttttaag
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAATCATGCTGGCCTTTCGAGCCAGCGACTCGGGTTCAA
ATCCCGGCCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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