The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1188
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 975585
End posion on genome 975509
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
aagacagcga
tRNA gene sequence 
GCCTCCTTAGCTCAGTAGGTAGCAGCGATGGACTGTTAATCCATAGGTCGCAGGTTCGAG
CCCTGCAGGAGGCGCCA
Downstream region at tRNA end position 
tttttctaaa
Secondary structure (Cloverleaf model)
>At1188	Asn	GTT
                   a      GCCA tttttctaaa
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     C - G
                     T - A          C G
                    T     C G T C C     A
      T G A        A      | | | | |     G
    A       C T C G       G C A G G     C
    G         | | |                 T T
    G       C A G C
      T A G        G     AGGTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCCTTAGCTCAGTAGGTAGCAGCGATGGACTGTTAATCCATAGGTCGCAGGTTCGAG
CCCTGCAGGAGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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