The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1190
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1097122
End posion on genome 1097049
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
atatttttgt
tRNA gene sequence 
GCCTCAGTGGCTCAGCCTGGTAGAGCGCCTGCTTGGTAAGCAGGAGGCCGCGGGTTCAAA
CCCCGCCTGAGGCTcgt
Downstream region at tRNA end position 
ttttaatttt
Secondary structure (Cloverleaf model)
>At1190	Thr	GGT
                   t      Tcgt ttttaatttt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          C A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGCC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTGGCTCAGCCTGGTAGAGCGCCTGCTTGGTAAGCAGGAGGCCGCGGGTTCAAA
CCCCGCCTGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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