The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1193
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 79472
End posion on genome 79543
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
taataactct
tRNA gene sequence 
GGACTTGTGGGGTAGTGGATATCCTTTCGGGCTTCGAACCCGAAGAACCGGGTTCGATCC
CCGGCAGGTCCGtcc
Downstream region at tRNA end position 
tgttctagaa
Secondary structure (Cloverleaf model)
>At1193	Arg	TCG
                   t      Gtcc tgttctagaa
                     G - C
                     G - C
                     A - T
                     C - G
                     T + G
                     T - A
                     G - C          C T
                    T     G G C C C     A
      T G A        G      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      T A          T     AGAA
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACTTGTGGGGTAGTGGATATCCTTTCGGGCTTCGAACCCGAAGAACCGGGTTCGATCC
CCGGCAGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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