The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1194
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 100500
End posion on genome 100572
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aaggtaattt
tRNA gene sequence 
AGCCCGTTAGTGTAGTGGTCAATCATGGGGGACTCTGGATCCCTCGACAGCAGTTCGAAT
CTGCTACGGGCTActt
Downstream region at tRNA end position 
gttttgtcag
Secondary structure (Cloverleaf model)
>At1194	Gln	CTG
                   t      Actt gttttgtcag
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     T C G T C     A
      T G A        A      | | | | |     G
    G       T G T G       A G C A G     C
    G         | | +                 T T
    T       T C A T
      C A A        G     CGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGTTAGTGTAGTGGTCAATCATGGGGGACTCTGGATCCCTCGACAGCAGTTCGAAT
CTGCTACGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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