The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1196
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 273038
End posion on genome 273109
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
atattttgtt
tRNA gene sequence 
GCCTCAGTGGCTTAGTGGCATAGCGCGTCCTTGGTAAGGACGAGGTCGCGAGTTCAACTC
TCGCCTGAGGCTtct
Downstream region at tRNA end position 
ttttcttttt
Secondary structure (Cloverleaf model)
>At1196	Thr	GGT
                   t      Ttct ttttcttttt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T C
                    T     C G C T C     A
        G A        G      | | | | |     A
      T     T T C G       G C G A G     C
      G       | | |                 T T
      G     T A G C
        C A        G     AGGTC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTGGCTTAGTGGCATAGCGCGTCCTTGGTAAGGACGAGGTCGCGAGTTCAACTC
TCGCCTGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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