The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1197
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 310772
End posion on genome 310856
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
gtcgcacagt
tRNA gene sequence 
GCGAGGGTAGCCAAGCCAGGTCAACGGCGCTAGCTTGAGGGGCTAGTCTAGTAGTAGTTC
TTGGGTTCGAATCCCATCCCTCGCAtat
Downstream region at tRNA end position 
tcatttggtc
Secondary structure (Cloverleaf model)
>At1197	Leu	GAG
                   t      Atat tcatttggtc
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T A C C C     A
    C C G A        A        | | | |     G
  A         A C C G       T T G G G     C
  G           | | |                 T T
  G         C G G C
    T C A A        G     TCTAGTAGTAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    C - G
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCCAGGTCAACGGCGCTAGCTTGAGGGGCTAGTCTAGTAGTAGTTC
TTGGGTTCGAATCCCATCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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