The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1198
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 337952
End posion on genome 338023
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gggcacacta
tRNA gene sequence 
GCATCGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACTCGGGTTCGAGTC
CCGGTCGATGCActt
Downstream region at tRNA end position 
tgttttttta
Secondary structure (Cloverleaf model)
>At1198	Gly	GCC
                   a      Actt tgttttttta
                     G - C
                     C - G
                     A - T
                     T - A
                     C - G
                     G - C
                     A - T          T G
                    T     G G C C C     A
      T G A        A      + | | | |     G
    G       T G T G       T C G G G     C
    G         | | |                 T T
    T       T C A C
      T A          T     AAAC
                    A - T
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCATCGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACTCGGGTTCGAGTC
CCGGTCGATGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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