The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1201
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 417635
End posion on genome 417707
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ttacgcaaga
tRNA gene sequence 
GCCTTTATAGCTCAGTCGGGAGAGCGCCAGACTGAAGATCTGGTTGTCGCCGGTTCAATT
CCGGCTGAAGGCAttg
Downstream region at tRNA end position 
gattttcctt
Secondary structure (Cloverleaf model)
>At1201	Phe	GAA
                   a      Attg gattttcctt
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     T + G
                     A - T          T T
                    T     C G G C C     A
      T G A        A      | | | | |     A
    C       C T C G       G C C G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     TTGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTTATAGCTCAGTCGGGAGAGCGCCAGACTGAAGATCTGGTTGTCGCCGGTTCAATT
CCGGCTGAAGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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