The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1203
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 849200
End posion on genome 849272
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
agtggagcaa
tRNA gene sequence 
GGGGCCGTAGGGTAGCCTGGAATCCTAGGAGACTGGGGGTCTTCTGACTCGCGTTCAAAT
CGCGGCGGCCCCAtac
Downstream region at tRNA end position 
ctgttttgga
Secondary structure (Cloverleaf model)
>At1203	Pro	GGG
                   a      Atac ctgttttgga
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C G C     A
      C G A        A      + | | | |     A
    C       T G G G       T C G C G     C
    T       | + | |                 T T
    G       A T C C
      G A          T     CTGAC
                    A - T
                    G + T
                    G - C
                    A - T
                    G   G
                  A       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCCTGGAATCCTAGGAGACTGGGGGTCTTCTGACTCGCGTTCAAAT
CGCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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