The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1205
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1004827
End posion on genome 1004901
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gggcaacagg
tRNA gene sequence 
GGGGTGGTAGGGTAGCCTGGTCCATCCTAGAGCGTTTGGGACGCTTTGACCCCAGTTCGA
ATCTGGGCCACCCCAttt
Downstream region at tRNA end position 
tttttatgaa
Secondary structure (Cloverleaf model)
>At1205	Pro	TGG
                   g      Attt tttttatgaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G G G T C     A
    C C G A        A      | | | | |     G
  T         T G G G       C C C A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        A     TGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTGGTAGGGTAGCCTGGTCCATCCTAGAGCGTTTGGGACGCTTTGACCCCAGTTCGA
ATCTGGGCCACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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